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Genomics · The big question

How DNA learned to fold: Mapping 1,025 species in 3D

Evolution of genome architecture

Editorial illustration for Evolution of genome architecture
Editorial illustration

Summary

When we picture DNA, we often think of a flat twisted ladder. But inside a cell, the genome is folded into complex three-dimensional shapes. The way this genetic instruction manual is folded dictates how a cell actually reads its genes. To understand how this microscopic origami evolved over billions of years, researchers mapped the 3D genome organization of 1,025 different species, spanning from simple bacteria to complex animals, plants, and fungi.

By analyzing vast amounts of structural data, the scientists discovered that our ancient, single-celled ancestors likely had completely random, unstructured genomes. Over time, two distinct architectural styles emerged. Most bacteria adopted a strategy called "global folding," which is a broad spatial organization of the entire genome. As evolution marched on, this global folding technique became the dominant architectural style in the plant kingdom.

Meanwhile, the animal kingdom took a different path. The researchers found that animals increasingly relied on a "checkerboard" pattern, where specific compartments of genetic material are spatially sorted and grouped together. While early traces of this checkerboard style can be seen in archaea (ancient single-celled microbes), the pattern grew highly complex throughout animal evolution.

Why it matters.

At its core, this massive evolutionary atlas reinforces a fundamental rule of biology: structure determines function. By understanding how the genetic code is physically organized across the entire tree of life, scientists have a powerful new lens for studying how genes are controlled. This foundational map will help researchers track how changes in DNA architecture drive evolutionary leaps or cause biological malfunctions.

It is important to note that this is early-stage, basic science. The findings represent a broad evolutionary map and currently lack direct applications for clinical diagnostics or medical treatments. However, foundational discoveries like this are exactly what the biotech industry needs to guide future innovations in structural biology and gene-editing therapies.

From the source

The story in numbers.

Species analyzed
1,025
Main higher-order architectures analyzed
2
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How DNA learned to fold: Mapping 1,025 species in 3D — Daily Strand